Curriculum Vitae
Education
PhD student in Computational Biology - University of Bern, Ass. Prof. Dr. T. Lemmin
2022 - Present
specializing in DL models for protein-ligand interactions
M.Sc. Bioinformatics - University of Hamburg
2019 - 2022
Thesis on methods to search for ligand-specific binding sites based on geometric patterns
B. Sc. Biochemistry - University of Tübingen
2015 - 2019
Thesis of quantitative analysis of the mouse gut metaproteome using isobaric labelling by tandem mass tags
Work Experience
Student Researcher - University of Hamburg, Prof. Dr. M. Rarey
April - September 2021
Implementation of tool 'LifeSoaks' into the SMARTSplus web server
Student Researcher - University of Hamburg, Prof. Dr. M. Rarey
January - June 2020
Maintenance of web page 'www.bioinformatik.de'
Intern through DAAD RISE scholarship - University of Bristol, Dr. F. Parmeggiani
June - September 2018
Design of interfaces on homooligomers using RosettaScripts to create self-assembling structures; Expression and purification of oligomers
Intern - MPI, Tübingen, Prof. Dr. E. Izaurralde
September 2017
MINI/MIDI-Preps, western blots, cloning (e.g. Gibson), transformation, cDNA synthesis, sequencing, PCR, immunoprecipitation
Skills
Technical Skills: Deep Learning, Biochemistry, Bioinformatics, Molecular Dynamics, Natural Language Processing
Languages: German (Native), English (C1), French (B2)
Other Skills: Linux, Python, Vim, tcl, VMD, OpenMM, LaTeX